IL_8CEU_053

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8CEU|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_053 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0849

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8CEU|1|a|C|1417
8CEU|1|a|G|1418
8CEU|1|a|A|1419
8CEU|1|a|A|1420
8CEU|1|a|G|1421
*
8CEU|1|a|C|1577
8CEU|1|a|U|1578
8CEU|1|a|A|1579
8CEU|1|a|A|1580
8CEU|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains

Chain H

Capreomycin IA