IL_8CEU_117

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_117 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0475

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CEU|1|a|U|1851
8CEU|1|a|U|1852
8CEU|1|a|A|1853
8CEU|1|a|A|1854
8CEU|1|a|U|1855
8CEU|1|a|U|1856
8CEU|1|a|G|1857
8CEU|1|a|A|1858
8CEU|1|a|U|1859
8CEU|1|a|G|1860
*
8CEU|1|a|U|1882
8CEU|1|a|U|1883
8CEU|1|a|G|1884
8CEU|1|a|A|1885
8CEU|1|a|U|1886
8CEU|1|a|C|1887
8CEU|1|a|G|1888
8CEU|1|a|A|1889
8CEU|1|a|A|1890
8CEU|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains