IL_8CF5_032
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_032 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.0654
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8CF5|1|AA|U|834
8CF5|1|AA|G|835
8CF5|1|AA|A|836
8CF5|1|AA|A|837
8CF5|1|AA|G|838
*
8CF5|1|AA|U|855
8CF5|1|AA|G|856
8CF5|1|AA|G|857
8CF5|1|AA|A|858
8CF5|1|AA|G|859
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain EE
- 60S ribosomal protein L2-A
- Chain b
- 60S ribosomal protein L43-A
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