3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_032 not in the Motif Atlas
Homologous match to IL_8C3A_033
Geometric discrepancy: 0.0654
The information below is about IL_8C3A_033
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_95716.2
Basepair signature
cWW-cWW-tHS-tHS-tSH-cWW
Number of instances in this motif group
18

Unit IDs

8CF5|1|AA|U|834
8CF5|1|AA|G|835
8CF5|1|AA|A|836
8CF5|1|AA|A|837
8CF5|1|AA|G|838
*
8CF5|1|AA|U|855
8CF5|1|AA|G|856
8CF5|1|AA|G|857
8CF5|1|AA|A|858
8CF5|1|AA|G|859

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L19-A
Chain EE
60S ribosomal protein L2-A
Chain b
60S ribosomal protein L43-A

Coloring options:


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