IL_8CF5_076

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_076 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.117

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CF5|1|AA|U|1702
8CF5|1|AA|U|1703
8CF5|1|AA|A|1704
8CF5|1|AA|U|1705
8CF5|1|AA|C|1706
8CF5|1|AA|A|1707
*
8CF5|1|AA|U|1737
8CF5|1|AA|C|1738
8CF5|1|AA|U|1739
8CF5|1|AA|U|1740
8CF5|1|AA|A|1741
8CF5|1|AA|U|1742
8CF5|1|AA|G|1743

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L34-A