IL_8CF5_082

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8CF5|1|AA|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_082 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0748

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8CF5|1|AA|C|1918
8CF5|1|AA|G|1919
8CF5|1|AA|U|1920
8CF5|1|AA|A|1921
8CF5|1|AA|A|1922
8CF5|1|AA|C|1923
*
8CF5|1|AA|G|1928
8CF5|1|AA|G|1929
8CF5|1|AA|A|1930
8CF5|1|AA|U|1931
8CF5|1|AA|A|1932
8CF5|1|AA|A|1933
8CF5|1|AA|G|1934

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain b

60S ribosomal protein L43-A

Chain c

Small subunit ribosomal RNA; SSU rRNA