IL_8CF5_086

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8CF5|1|AA|U|2159, 8CF5|1|AA|U|2175, 8CF5|1|AA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_086 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0723

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8CF5|1|AA|C|2156
8CF5|1|AA|G|2157
8CF5|1|AA|A|2158
8CF5|1|AA|U|2159
8CF5|1|AA|G|2160
8CF5|1|AA|G|2161
*
8CF5|1|AA|U|2173
8CF5|1|AA|G|2174
8CF5|1|AA|U|2175
8CF5|1|AA|U|2176
8CF5|1|AA|G|2177
8CF5|1|AA|A|2178
8CF5|1|AA|C|2179
8CF5|1|AA|G|2180

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain b

60S ribosomal protein L43-A

Chain c

Small subunit ribosomal RNA; SSU rRNA