IL_8CF5_088

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8CF5|1|AA|A|2242, 8CF5|1|AA|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_088 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0729

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8CF5|1|AA|U|2200
8CF5|1|AA|G|2201
*
8CF5|1|AA|U|2241
8CF5|1|AA|A|2242
8CF5|1|AA|A|2243
8CF5|1|AA|A|2244

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain c

Small subunit ribosomal RNA; SSU rRNA