IL_8CF5_090

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_090 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0801

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8CF5|1|AA|U|2211
8CF5|1|AA|C|2212
8CF5|1|AA|A|2213
8CF5|1|AA|A|2214
8CF5|1|AA|A|2215
8CF5|1|AA|G|2216
8CF5|1|AA|U|2217
*
8CF5|1|AA|A|2228
8CF5|1|AA|A|2229
8CF5|1|AA|C|2230
8CF5|1|AA|C|2231
8CF5|1|AA|A|2232
8CF5|1|AA|A|2233
8CF5|1|AA|G|2234

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA

Chain U

60S ribosomal protein L36-A