IL_8CF5_111

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8CF5|1|AA|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_111 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0872

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8CF5|1|AA|G|2828
8CF5|1|AA|U|2829
8CF5|1|AA|G|2830
*
8CF5|1|AA|U|2858
8CF5|1|AA|U|2859
8CF5|1|AA|U|2860
8CF5|1|AA|U|2861
8CF5|1|AA|U|2862

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain FF

60S ribosomal protein L3

Chain MM

60S ribosomal protein L10