IL_8CF5_122
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 8CF5|1|AA|A|3142, 8CF5|1|AA|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_122 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.0987
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
8CF5|1|AA|C|3004
8CF5|1|AA|A|3005
8CF5|1|AA|A|3006
8CF5|1|AA|U|3007
*
8CF5|1|AA|A|3139
8CF5|1|AA|G|3140
8CF5|1|AA|A|3141
8CF5|1|AA|A|3142
8CF5|1|AA|C|3143
8CF5|1|AA|G|3144
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain FF
- 60S ribosomal protein L3
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