IL_8CF5_128

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8CF5|1|AA|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_128 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0764

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8CF5|1|AA|A|3103
8CF5|1|AA|U|3104
8CF5|1|AA|U|3105
8CF5|1|AA|A|3106
8CF5|1|AA|U|3107
*
8CF5|1|AA|A|3127
8CF5|1|AA|G|3128
8CF5|1|AA|A|3129
8CF5|1|AA|A|3130
8CF5|1|AA|U|3131

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain LL

RPL9A isoform 1

Chain Y

Ubiquitin-60S ribosomal protein L40