IL_8CF5_149
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8CF5|1|BB|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_149 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0648
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8CF5|1|BB|A|72
8CF5|1|BB|C|73
8CF5|1|BB|C|74
8CF5|1|BB|G|75
8CF5|1|BB|A|76
8CF5|1|BB|G|77
8CF5|1|BB|U|78
8CF5|1|BB|A|79
8CF5|1|BB|G|80
*
8CF5|1|BB|C|100
8CF5|1|BB|G|101
8CF5|1|BB|A|102
8CF5|1|BB|A|103
8CF5|1|BB|A|104
8CF5|1|BB|C|105
8CF5|1|BB|U|106
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 60S ribosomal protein L20-A
- Chain F
- 60S ribosomal protein L21-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain MM
- 60S ribosomal protein L10
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