IL_8CF5_158
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 8CF5|1|c|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_158 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.0937
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|c|G|42
8CF5|1|c|A|43
8CF5|1|c|U|44
8CF5|1|c|U|45
8CF5|1|c|A|46
8CF5|1|c|A|47
8CF5|1|c|G|48
*
8CF5|1|c|C|431
8CF5|1|c|G|432
8CF5|1|c|C|433
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Elongation factor 2
- Chain z
- 40S ribosomal protein S23-A
Coloring options: