IL_8CF5_192
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GAAAAAAUU*AUAUU(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_192 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.4971
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|c|G|751
8CF5|1|c|A|752
8CF5|1|c|A|753
8CF5|1|c|A|754
8CF5|1|c|A|755
8CF5|1|c|A|756
8CF5|1|c|A|757
8CF5|1|c|U|758
8CF5|1|c|U|759
*
8CF5|1|c|A|791
8CF5|1|c|U|792
8CF5|1|c|A|793
8CF5|1|c|U|794
8CF5|1|c|U|795
8CF5|1|c|A2M|796
8CF5|1|c|G|797
8CF5|1|c|C|798
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein S4-A
- Chain m
- 40S ribosomal protein S9-A
- Chain o
- 40S ribosomal protein S11-A
- Chain y
- 40S ribosomal protein S22-A
Coloring options: