IL_8CF5_193

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGUUU*AUCG

Length

9 nucleotides

Bulged bases

8CF5|1|c|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_193 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.3713

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8CF5|1|c|C|818
8CF5|1|c|G|819
8CF5|1|c|U|820
8CF5|1|c|U|821
8CF5|1|c|U|822
*
8CF5|1|c|A|850
8CF5|1|c|U|851
8CF5|1|c|C|852
8CF5|1|c|G|853

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain k

40S ribosomal protein S7-A