IL_8CF5_205

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_205 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0814

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8CF5|1|c|G|1111
8CF5|1|c|G|1112
8CF5|1|c|A|1113
8CF5|1|c|G|1114
8CF5|1|c|U|1115
8CF5|1|c|A|1116
8CF5|1|c|U|1117
8CF5|1|c|G|1118
*
8CF5|1|c|U|1129
8CF5|1|c|G|1130
8CF5|1|c|A|1131
8CF5|1|c|A|1132
8CF5|1|c|A|1133
8CF5|1|c|C|1134

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain z

40S ribosomal protein S23-A