IL_8CF5_216
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 8CF5|1|c|A|1427
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_216 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.1621
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8CF5|1|c|C|1279
8CF5|1|c|4AC|1280
8CF5|1|c|G|1281
*
8CF5|1|c|C|1426
8CF5|1|c|A|1427
8CF5|1|c|OMG|1428
8CF5|1|c|G|1429
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain f
- 40S ribosomal protein S2
- Chain g
- RPS3 isoform 1
- Chain s
- 40S ribosomal protein S16-A
- Chain w
- 40S ribosomal protein S20
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