IL_8CF5_230
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_230 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2281
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CF5|1|c|C|1644
8CF5|1|c|G|1645
8CF5|1|c|C|1646
8CF5|1|c|U|1647
*
8CF5|1|c|A|1753
8CF5|1|c|A|1754
8CF5|1|c|A|1755
8CF5|1|c|A|1756
8CF5|1|c|G|1757
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain Z
- 60S ribosomal protein L41
- Chain z
- 40S ribosomal protein S23-A
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