3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
GGCU*GAUUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_252 not in the Motif Atlas
Homologous match to IL_8C3A_111
Geometric discrepancy: 0.07
The information below is about IL_8C3A_111
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50458.1
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
5

Unit IDs

8CF5|1|AA|G|2823
8CF5|1|AA|G|2824
8CF5|1|AA|C|2825
8CF5|1|AA|U|2826
*
8CF5|1|AA|G|2863
8CF5|1|AA|A|2864
8CF5|1|AA|U|2865
8CF5|1|AA|U|2866
8CF5|1|AA|C|2867

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain Bb
Transfer RNA; tRNA
Chain FF
60S ribosomal protein L3
Chain MM
60S ribosomal protein L10
Chain N
60S ribosomal protein L29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2951 s