IL_8CF5_256
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- (OMG)UGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8CF5|1|c|A|579, 8CF5|1|c|U|581, 8CF5|1|c|U|582
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_256 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1624
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CF5|1|c|OMG|562
8CF5|1|c|U|563
8CF5|1|c|G|564
8CF5|1|c|C|565
8CF5|1|c|C|566
8CF5|1|c|A|567
8CF5|1|c|G|568
*
8CF5|1|c|C|575
8CF5|1|c|G|576
8CF5|1|c|G|577
8CF5|1|c|OMU|578
8CF5|1|c|A|579
8CF5|1|c|A|580
8CF5|1|c|U|581
8CF5|1|c|U|582
8CF5|1|c|C|583
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S30-A
- Chain Aa
- Elongation factor 2
- Chain Bb
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain g
- RPS3 isoform 1
- Chain z
- 40S ribosomal protein S23-A
Coloring options: