IL_8CF8_001

3D structure

PDB id

8CF8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eravacycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8CF8|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF8_001 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0781

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8CF8|1|A|G|933
8CF8|1|A|C|934
8CF8|1|A|A|935
*
8CF8|1|A|U|1380
8CF8|1|A|U|1381
8CF8|1|A|C|1382
8CF8|1|A|C|1383
8CF8|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

Small ribosomal subunit protein uS9