3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
8CF8|1|A|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF8_001 not in the Motif Atlas
Homologous match to IL_5J7L_041
Geometric discrepancy: 0.0781
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

8CF8|1|A|G|933
8CF8|1|A|C|934
8CF8|1|A|A|935
*
8CF8|1|A|U|1380
8CF8|1|A|U|1381
8CF8|1|A|C|1382
8CF8|1|A|C|1383
8CF8|1|A|C|1384

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
Small ribosomal subunit protein uS9

Coloring options:


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