3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
8CF8|1|A|U|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF8_014 not in the Motif Atlas
Homologous match to IL_5J7L_054
Geometric discrepancy: 0.1002
The information below is about IL_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

8CF8|1|A|U|1247
8CF8|1|A|A|1248
8CF8|1|A|C|1249
8CF8|1|A|A|1250
8CF8|1|A|A|1251
8CF8|1|A|A|1252
8CF8|1|A|G|1253
*
8CF8|1|A|C|1284
8CF8|1|A|A|1285
8CF8|1|A|U|1286
8CF8|1|A|A|1287
8CF8|1|A|A|1288
8CF8|1|A|A|1289
8CF8|1|A|G|1290

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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