IL_8CG8_043

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_043 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.0975

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8CG8|1|AA|G|1005
8CG8|1|AA|A|1006
8CG8|1|AA|U|1007
8CG8|1|AA|U|1008
8CG8|1|AA|A|1009
*
8CG8|1|AA|U|1041
8CG8|1|AA|U|1042
8CG8|1|AA|C|1043
8CG8|1|AA|U|1044
8CG8|1|AA|C|1045

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10