IL_8CG8_045

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_045 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2816

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8CG8|1|AA|U|1014
8CG8|1|AA|U|1015
8CG8|1|AA|C|1016
8CG8|1|AA|C|1017
8CG8|1|AA|G|1018
*
8CG8|1|AA|U|1034
8CG8|1|AA|G|1035
8CG8|1|AA|A|1036

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10

Chain NN

60S ribosomal protein L11-A