IL_8CG8_061
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8CG8|1|AA|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CG8_061 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0758
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8CG8|1|AA|U|1388
8CG8|1|AA|G|1389
8CG8|1|AA|A|1390
8CG8|1|AA|C|1391
8CG8|1|AA|G|1392
8CG8|1|AA|A|1393
8CG8|1|AA|A|1394
8CG8|1|AA|G|1395
*
8CG8|1|AA|U|1415
8CG8|1|AA|C|1416
8CG8|1|AA|G|1417
8CG8|1|AA|A|1418
8CG8|1|AA|A|1419
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GG
- 60S ribosomal protein L4-A
- Chain II
- 60S ribosomal protein L6-A
- Chain K
- 60S ribosomal protein L26-A
- Chain Q
- 60S ribosomal protein L32
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