IL_8CG8_081
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8CG8|1|AA|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CG8_081 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0896
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8CG8|1|AA|C|1918
8CG8|1|AA|G|1919
8CG8|1|AA|U|1920
8CG8|1|AA|A|1921
8CG8|1|AA|A|1922
8CG8|1|AA|C|1923
*
8CG8|1|AA|G|1928
8CG8|1|AA|G|1929
8CG8|1|AA|A|1930
8CG8|1|AA|U|1931
8CG8|1|AA|A|1932
8CG8|1|AA|A|1933
8CG8|1|AA|G|1934
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L41
- Chain b
- 60S ribosomal protein L43-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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