IL_8CG8_100

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_100 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.2594

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

8CG8|1|AA|C|2444
8CG8|1|AA|A|2445
*
8CG8|1|AA|U|2501
8CG8|1|AA|A|2502
8CG8|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A