IL_8CG8_102

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAG*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_102 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.2519

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8CG8|1|AA|G|2448
8CG8|1|AA|A|2449
8CG8|1|AA|G|2450
*
8CG8|1|AA|U|2497
8CG8|1|AA|U|2498
8CG8|1|AA|U|2499

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA

Chain e

40S ribosomal protein S1-A