IL_8CG8_168

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CG8|1|c|U|144, 8CG8|1|c|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_168 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2271

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CG8|1|c|G|142
8CG8|1|c|G|143
8CG8|1|c|U|144
8CG8|1|c|A|145
8CG8|1|c|U|146
8CG8|1|c|A|147
8CG8|1|c|A|148
8CG8|1|c|C|149
*
8CG8|1|c|G|165
8CG8|1|c|C|166
8CG8|1|c|U|167
8CG8|1|c|A|168
8CG8|1|c|A|169
8CG8|1|c|U|170
8CG8|1|c|A|171
8CG8|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A