IL_8CGD_007
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_007 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0442
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8CGD|1|a|C|239
8CGD|1|a|C|240
8CGD|1|a|A|241
8CGD|1|a|G|242
8CGD|1|a|U|243
8CGD|1|a|A|244
8CGD|1|a|G|245
*
8CGD|1|a|C|253
8CGD|1|a|G|254
8CGD|1|a|A|255
8CGD|1|a|A|256
8CGD|1|a|C|257
8CGD|1|a|G|258
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- 50S ribosomal protein L15
Coloring options: