IL_8CGD_021

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8CGD|1|a|G|776, 8CGD|1|a|A|788, 8CGD|1|a|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_021 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0803

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8CGD|1|a|G|775
8CGD|1|a|G|776
8CGD|1|a|G|777
*
8CGD|1|a|C|787
8CGD|1|a|A|788
8CGD|1|a|A|789
8CGD|1|a|U|790
8CGD|1|a|C|791

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain r

Large ribosomal subunit protein uL22