IL_8CGD_026
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_026 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.0531
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CGD|1|a|G|856
8CGD|1|a|G|857
8CGD|1|a|G|858
8CGD|1|a|G|859
8CGD|1|a|U|860
8CGD|1|a|A|861
8CGD|1|a|G|862
*
8CGD|1|a|C|915
8CGD|1|a|G|916
8CGD|1|a|A|917
8CGD|1|a|A|918
8CGD|1|a|U|919
8CGD|1|a|A|920
8CGD|1|a|C|921
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- 50S ribosomal protein L25
- Chain v
- Large ribosomal subunit protein bL27
- Chain y
- Large ribosomal subunit protein uL30
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