IL_8CGD_031

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

8CGD|1|a|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_031 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.2318

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8CGD|1|a|G|879
8CGD|1|a|G|880
8CGD|1|a|G|881
*
8CGD|1|a|U|895
8CGD|1|a|A|896
8CGD|1|a|C|897
8CGD|1|a|C|898

Current chains

Chain a

23S rRNA

Nearby chains