IL_8CGD_041
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8CGD|1|a|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGD_041 not in the Motif Atlas
- Geometric match to IL_5J7L_284
- Geometric discrepancy: 0.1307
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8CGD|1|a|C|1043
8CGD|1|a|C|1044
8CGD|1|a|C|1045
8CGD|1|a|A|1046
8CGD|1|a|G|1047
8CGD|1|a|A|1048
8CGD|1|a|C|1049
8CGD|1|a|A|1050
8CGD|1|a|G|1051
*
8CGD|1|a|U|1108
8CGD|1|a|C|1109
8CGD|1|a|G|1110
8CGD|1|a|A|1111
8CGD|1|a|G|1112
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: