IL_8CGD_047

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_047 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.0719

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8CGD|1|a|C|1319
8CGD|1|a|C|1320
8CGD|1|a|A|1321
8CGD|1|a|A|1322
8CGD|1|a|C|1323
*
8CGD|1|a|G|1331
8CGD|1|a|G|1332
8CGD|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22

Chain s

Large ribosomal subunit protein uL23