IL_8CGD_060

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_060 not in the Motif Atlas

Geometric match to IL_2H1M_002

Geometric discrepancy: 0.1403

The information below is about IL_2H1M_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8CGD|1|a|C|1531
8CGD|1|a|A|1532
8CGD|1|a|C|1533
*
8CGD|1|a|G|1538
8CGD|1|a|U|1539
8CGD|1|a|G|1540

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23