IL_8CGD_067

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_067 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1141

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8CGD|1|a|U|1720
8CGD|1|a|G|1721
8CGD|1|a|A|1722
8CGD|1|a|G|1723
8CGD|1|a|G|1724
*
8CGD|1|a|U|1736
8CGD|1|a|G|1737
8CGD|1|a|G|1738
8CGD|1|a|A|1739
8CGD|1|a|G|1740

Current chains

Chain a

23S rRNA

Nearby chains