IL_8CGD_114

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_114 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0322

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8CGD|1|a|G|1666
8CGD|1|a|G|1667
8CGD|1|a|A|1668
8CGD|1|a|A|1669
8CGD|1|a|C|1670
8CGD|1|a|U|1671
8CGD|1|a|A|1672
8CGD|1|a|G|1673
8CGD|1|a|G|1674
*
8CGD|1|a|C|1990
8CGD|1|a|U|1991
8CGD|1|a|G|1992
8CGD|1|a|U|1993
8CGD|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14