IL_8CGD_115

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGD_115 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0523

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CGD|1|a|U|1851
8CGD|1|a|U|1852
8CGD|1|a|A|1853
8CGD|1|a|A|1854
8CGD|1|a|U|1855
8CGD|1|a|U|1856
8CGD|1|a|G|1857
8CGD|1|a|A|1858
8CGD|1|a|U|1859
8CGD|1|a|G|1860
*
8CGD|1|a|U|1882
8CGD|1|a|U|1883
8CGD|1|a|G|1884
8CGD|1|a|A|1885
8CGD|1|a|U|1886
8CGD|1|a|C|1887
8CGD|1|a|G|1888
8CGD|1|a|A|1889
8CGD|1|a|A|1890
8CGD|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains