IL_8CGJ_012

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CGJ|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGJ_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.065

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CGJ|1|A|G|147
8CGJ|1|A|G|148
8CGJ|1|A|A|149
8CGJ|1|A|U|150
8CGJ|1|A|A|151
8CGJ|1|A|A|152
8CGJ|1|A|C|153
*
8CGJ|1|A|G|168
8CGJ|1|A|C|169
8CGJ|1|A|U|170
8CGJ|1|A|A|171
8CGJ|1|A|A|172
8CGJ|1|A|U|173
8CGJ|1|A|A|174
8CGJ|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20