IL_8CGJ_022

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGJ_022 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.0624

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8CGJ|1|A|G|450
8CGJ|1|A|A|451
8CGJ|1|A|A|452
8CGJ|1|A|G|453
8CGJ|1|A|G|454
8CGJ|1|A|G|455
*
8CGJ|1|A|C|477
8CGJ|1|A|A|478
8CGJ|1|A|U|479
8CGJ|1|A|U|480
8CGJ|1|A|G|481
8CGJ|1|A|A|482
8CGJ|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16