IL_8CGK_094

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGK_094 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0507

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CGK|1|a|C|2652
8CGK|1|a|U|2653
8CGK|1|a|A|2654
8CGK|1|a|G|2655
8CGK|1|a|U|2656
8CGK|1|a|A|2657
8CGK|1|a|C|2658
*
8CGK|1|a|G|2663
8CGK|1|a|G|2664
8CGK|1|a|A|2665
8CGK|1|a|C|2666
8CGK|1|a|C|2667
8CGK|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

Large ribosomal subunit protein uL6