IL_8CGK_098
3D structure
- PDB id
- 8CGK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Lincomycin and Avilamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.64 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGK_098 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.048
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CGK|1|a|G|2737
8CGK|1|a|A|2738
8CGK|1|a|U|2739
8CGK|1|a|A|2740
8CGK|1|a|A|2741
8CGK|1|a|G|2742
*
8CGK|1|a|C|2762
8CGK|1|a|G|2763
8CGK|1|a|A|2764
8CGK|1|a|A|2765
8CGK|1|a|A|2766
8CGK|1|a|C|2767
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- Large ribosomal subunit protein uL13
Coloring options: