IL_8CGK_103
3D structure
- PDB id
- 8CGK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Lincomycin and Avilamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.64 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGK_103 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0492
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CGK|1|b|C|71
8CGK|1|b|G|72
8CGK|1|b|A|73
8CGK|1|b|U|74
8CGK|1|b|G|75
8CGK|1|b|G|76
8CGK|1|b|U|77
8CGK|1|b|A|78
8CGK|1|b|G|79
*
8CGK|1|b|C|97
8CGK|1|b|G|98
8CGK|1|b|A|99
8CGK|1|b|G|100
8CGK|1|b|A|101
8CGK|1|b|G|102
8CGK|1|b|U|103
8CGK|1|b|A|104
8CGK|1|b|G|105
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain u
- 50S ribosomal protein L25
- Chain y
- Large ribosomal subunit protein uL30
Coloring options: