IL_8CGK_106

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGK_106 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0258

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8CGK|1|a|G|1666
8CGK|1|a|G|1667
8CGK|1|a|A|1668
8CGK|1|a|A|1669
8CGK|1|a|C|1670
8CGK|1|a|U|1671
8CGK|1|a|A|1672
8CGK|1|a|G|1673
8CGK|1|a|G|1674
*
8CGK|1|a|C|1990
8CGK|1|a|U|1991
8CGK|1|a|G|1992
8CGK|1|a|U|1993
8CGK|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14