IL_8CGK_107

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGK_107 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.041

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8CGK|1|a|U|1851
8CGK|1|a|U|1852
8CGK|1|a|A|1853
8CGK|1|a|A|1854
8CGK|1|a|U|1855
8CGK|1|a|U|1856
8CGK|1|a|G|1857
8CGK|1|a|A|1858
8CGK|1|a|U|1859
8CGK|1|a|G|1860
*
8CGK|1|a|U|1882
8CGK|1|a|U|1883
8CGK|1|a|G|1884
8CGK|1|a|A|1885
8CGK|1|a|U|1886
8CGK|1|a|C|1887
8CGK|1|a|G|1888
8CGK|1|a|A|1889
8CGK|1|a|A|1890
8CGK|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains