IL_8CGN_098
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- C(OMU)C*GAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CGN_098 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.1163
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_61702.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CGN|1|AA|C|2420
8CGN|1|AA|OMU|2421
8CGN|1|AA|C|2422
*
8CGN|1|AA|G|2608
8CGN|1|AA|A|2609
8CGN|1|AA|G|2610
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Cc
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L42-A
Coloring options: