IL_8CGN_101

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GAG*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_101 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2942

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8CGN|1|AA|G|2448
8CGN|1|AA|A|2449
8CGN|1|AA|G|2450
*
8CGN|1|AA|U|2497
8CGN|1|AA|U|2498
8CGN|1|AA|U|2499

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA