IL_8CGN_167

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CGN|1|c|U|144, 8CGN|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_167 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1652

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CGN|1|c|G|142
8CGN|1|c|G|143
8CGN|1|c|U|144
8CGN|1|c|A|145
8CGN|1|c|U|146
8CGN|1|c|A|147
8CGN|1|c|A|148
8CGN|1|c|C|149
*
8CGN|1|c|G|165
8CGN|1|c|C|166
8CGN|1|c|U|167
8CGN|1|c|A|168
8CGN|1|c|A|169
8CGN|1|c|U|170
8CGN|1|c|A|171
8CGN|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A