IL_8CGN_195

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GAA*UU(A2M)GC

Length

8 nucleotides

Bulged bases

8CGN|1|c|U|795

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CGN_195 not in the Motif Atlas

Geometric match to IL_3LOA_003

Geometric discrepancy: 0.3838

The information below is about IL_3LOA_003

Detailed Annotation

Decoding loop with one bulged A

Broad Annotation

Decoding loop with one bulged A

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8CGN|1|c|G|751
8CGN|1|c|A|752
8CGN|1|c|A|753
*
8CGN|1|c|U|794
8CGN|1|c|U|795
8CGN|1|c|A2M|796
8CGN|1|c|G|797
8CGN|1|c|C|798

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain o

40S ribosomal protein S11-A

Chain y

40S ribosomal protein S22-A